State: NE
Flagship university: University of Nebraska
City in which the FS U is located: Lincoln
Official website of the FS U: www.unl.edu
Link providing proof of flagshipness: here
Notes: none

State: NV
Flagship university: University of Nevada
City in which the FS U is located: Reno
Official website of the FS U: www.unr.edu
Link providing proof of flagshipness: here and also here
Notes: none

State: NH
Flagship university: University of New Hampshire
City in which the FS U is located: Durham
Official website of the FS U: www.unh.edu
Link providing proof of flagshipness: here
Notes: none

State: NJ
Flagship university: ???
City in which the FS U is located: ???
Official website of the FS U: ???
Link providing proof of flagshipness: ???
Notes: There is, unfortunately, no clue to be had about which, if any, NJ university is the flagship. Email Flagship Moly if you are enlightened re: this.

State: NM
Flagship university: University of New Mexico
City in which the FS U is located: Albuquerque
Official website of the FS U: www.unm.edu
Link providing proof of flagshipness: here
Notes: none

State: NY
Flagship university: University at Buffalo
City in which the FS U is located: Buffalo
Official website of the FS U: www.buffalo.edu
Link providing proof of flagshipness: here
Notes: This one's a little iffy because of all this SUNY weirdness, but I guess UB is the flagship.

State: NC
Flagship university: University of North Carolina
City in which the FS U is located: Chapel Hill
Official website of the FS U: www.unc.edu
Link providing proof of flagshipness: here
Notes: none